MGnify (EBI Metagenomics) platform status

MGnify APIThe API connects the MGnify database to the website, and to users' scripts: ebi.ac.uk/metagenomics/api

Operational

MGnify MongoDBMGnify's API is backed by two databases. This check specifically targets the MongoDB used to store assembly analysis contigs.

Operational

MGnify WebsiteThe ebi.ac.uk/metagenomics website

Operational

MGnify Notebooks Server (EMBL ShinyProxy host)MGnify's Notebooks Server (notebooks.mgnify.org) is a Jupyter Lab environment with R and Python examples and libraries to use the MGnify API.

Operational

MGnify Text Search (powered by EBI Search)The Text Search service is the primary way to search for studies, samples, and analyses on the MGnify website. Is it powered by an EBI-wide search service.

Operational

MGnify Sequence Search (powered by HMMER)MGnify's sequence search is a HMMER-based search against MGnify's non-redundant protein database

Operational

MGnify Genome Search API (powered by COBS)The Genome Search (by gene fragment) API is a COBS-powered service for searching gene sequences against MGnify's MAG (metagenome-assembled genome) Catalogues.

Operational

MGnify Genome Search API (powered by Sourmash)The Genome Search (by query MAG) API is a Sourmash-powered service for searching query MAGs against MGnify's MAG (metagenome-assembled genome) Catalogues.

Operational